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ebbba235a1
fix links in readme
master
C Reid
2019-01-30 00:01:09 -08:00
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949119a0dd
fix typos in installing instructions
C Reid
2019-01-29 23:59:21 -08:00
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e7cde484d5
add blog link to travis tba page
C Reid
2019-01-29 23:57:58 -08:00
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924b8a83f5
update kubernetes docs
C Reid
2019-01-29 23:57:41 -08:00
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06dfc9c901
Merge branch 'add-docs'
C Reid
2019-01-29 23:50:43 -08:00
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0b860534e2
clarify gcp kubernetes guide
C Reid
2019-01-29 23:49:24 -08:00
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9c909a2fb8
add link to blog post to travis docs page
add-docs
C Reid
2019-01-29 23:48:09 -08:00
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08a3250203
clarify k8s minikube instructions
C Reid
2019-01-29 23:43:57 -08:00
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b381654c71
update installation instructions to clarify and mention s3 buckets
C Reid
2019-01-29 23:39:55 -08:00
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31c31544ba
add documentation pages (#4)
Chaz Reid
2019-01-29 23:35:28 -08:00
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266a4d00ac
fix readme to match docs index - shorter and more succinct
C Reid
2019-01-29 23:33:39 -08:00
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95b79ef15f
update documentation to mark unfinished TBA pages
C Reid
2019-01-29 23:15:59 -08:00
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b2ab9ed8a2
add complete and tested gcp instructions
C Reid
2019-01-28 23:52:00 -08:00
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7debeb24d6
add shields for minikube, k8s, and ubuntu versions
C Reid
2019-01-28 22:40:46 -08:00
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c23f0656de
update comments in travis file, remove unnecessary redis image init
C Reid
2019-01-28 22:40:33 -08:00
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064d98c6ea
add ubuntu shields
C Reid
2019-01-28 22:34:36 -08:00
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b810e5e362
Merge branch 'better-tests' of https://github.com/charlesreid1/2019-snakemake-byok8s into better-tests
better-tests
Charles Reid
2019-01-28 16:22:03 -08:00
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4cb9d64f25
add quickstart section to index
C Reid
2019-01-26 23:54:07 -08:00
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38fa8a624e
fix url again
C Reid
2019-01-26 23:48:43 -08:00
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41e1a23009
use https address for submodule, for travis
C Reid
2019-01-26 23:45:21 -08:00
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58cfb0cb5a
add custom css and images dir
C Reid
2019-01-26 23:43:04 -08:00
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312621a9cd
add requirements file for documentation building
C Reid
2019-01-26 23:42:55 -08:00
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b8ba8ba860
add travis tests page
C Reid
2019-01-26 23:42:41 -08:00
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1934a04bce
update gitignore for mkdocs
C Reid
2019-01-26 23:34:13 -08:00
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249b9f05cd
add mkdocs-material-dib submodule
C Reid
2019-01-26 23:33:35 -08:00
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a2b2c0ddd4
removing kubernetes md files, moved to docs/
C Reid
2019-01-26 23:33:32 -08:00
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ac9b351d4c
add fleshed out docs
C Reid
2019-01-26 23:33:09 -08:00
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4cfe1ed28d
init checkin of mkdocs site
gh-pages
C Reid
2019-01-26 23:13:10 -08:00
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82fbeac2a4
init commit of gh-pages branch
C Reid
2019-01-26 23:12:14 -08:00
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2b8b7855d6
add hallo werld for github pages
C Reid
2019-01-26 20:44:27 -08:00
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01a7647aae
more readme typo fixes
C Reid
2019-01-26 01:39:15 -08:00
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6515a67225
add instructions for kubernetes using minikube alone, since it is a little bit complicated on aws nodes.
C Reid
2019-01-26 01:33:06 -08:00
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2d54c50e32
Merge branch 'better-tests'
C Reid
2019-01-26 01:30:24 -08:00
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abd0fc8a6a
update readme instructions
C Reid
2019-01-26 01:28:36 -08:00
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beecef4b41
Better tests (#3)
Chaz Reid
2019-01-26 01:03:02 -08:00
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23769105d0
Merge branch 'master' into better-tests
Chaz Reid
2019-01-26 01:02:52 -08:00
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104d0fe868
add a slightly harder test
C Reid
2019-01-26 00:57:11 -08:00
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9bbc217d32
switch to python build env. no material change yet.
C Reid
2019-01-26 00:51:51 -08:00
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86751c36a0
commit to lilic/travis-minikube kube-1.12 branch
C Reid
2019-01-26 00:47:16 -08:00
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cd86326b8b
switch to an easier task. if this build fails it is the version numbers causing problems.
C Reid
2019-01-26 00:25:17 -08:00
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7793f9cc32
implement coredns fixes, kubectl apply, and byok8s into travis tests
C Reid
2019-01-26 00:19:58 -08:00
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6bb04d44d7
fix flag
Charles Reid
2019-01-26 00:11:33 -08:00
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5b3c10d2dd
fix flags and remote provider approach: force s3
Charles Reid
2019-01-26 00:04:23 -08:00
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47849200d0
updating tests with yml files to fix k8s dns container
Charles Reid
2019-01-25 23:03:49 -08:00
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c2de3e8567
add kube-system DNS fix
Charles Reid
2019-01-25 17:17:14 -08:00
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3b86a9ebe2
moving snakefile
Charles Reid
2019-01-25 17:11:00 -08:00
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f669ff6951
fix how snakefile is being dealt with.
Charles Reid
2019-01-25 17:07:45 -08:00
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3c93c1b236
update requirements for kubernetes, snakemake, s3
Charles Reid
2019-01-25 13:44:49 -08:00
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1095efc568
bump k8s version, 1.9->1.10
Charles Reid
2019-01-25 13:44:11 -08:00
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46108c379e
update byok8s test - test all workflows
Charles Reid
2019-01-22 15:17:01 -08:00
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e47cfe66c0
update snakefile zeta workflow
Charles Reid
2019-01-22 15:14:11 -08:00
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d3f295d7da
add byok8s tests - WIP
C Reid
2019-01-22 15:00:08 -08:00
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e99286a4e0
update travis.yml to reset to master LiliC/travis-minikube (#2)
k8
Chaz Reid
2019-01-22 00:35:37 -08:00
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d18d7416a3
make travis use python
reset-travis
C Reid
2019-01-22 00:32:15 -08:00
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04dce75b10
call byok8s from .travis.yml
C Reid
2019-01-22 00:28:46 -08:00
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675023537c
fix workflow labels in readme
C Reid
2019-01-22 00:28:15 -08:00
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7f537c1f8e
start k8s from test/
C Reid
2019-01-22 00:22:18 -08:00
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c2b7d2c1f6
Merge branch 'master' into reset-travis
Chaz Reid
2019-01-21 21:50:47 -08:00
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43e9832f99
update travis.yml to reset to master LiliC/travis-minikube
C Reid
2019-01-21 21:46:25 -08:00
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8eb101ee41
try bumping versions
gh/master
C Reid
2019-01-21 21:32:56 -08:00
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e1c3c36057
try localkube bootstrap and kubernetes version
C Reid
2019-01-21 21:26:53 -08:00
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fe6d0a1b7f
try localkube bootstrap
C Reid
2019-01-21 21:02:50 -08:00
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cca8aecb0e
remove hard-coded kuberentes version
C Reid
2019-01-21 20:55:38 -08:00
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76069a7c36
one line per command
C Reid
2019-01-21 20:50:53 -08:00
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67278756c4
add language to .travis.yml
C Reid
2019-01-21 20:47:07 -08:00
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f011a2bcc8
Merge branch 'fix-travis'
C Reid
2019-01-21 20:39:17 -08:00
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c7996525c4
fix travis
fix-travis
C Reid
2019-01-21 20:39:08 -08:00
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636b2a26d3
fix travis link
C Reid
2019-01-21 20:28:12 -08:00
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50c3e3a5f6
update order
C Reid
2019-01-21 20:23:39 -08:00
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63e21d5139
add coreutils to build deps
C Reid
2019-01-21 19:52:02 -08:00
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6563612524
Merge branch 'k8'
C Reid
2019-01-21 19:42:14 -08:00
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0b2eff8bd5
update hello/goodbye/amy/beth to alpha/gamma/red/blue
C Reid
2019-01-21 19:39:59 -08:00
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191dc78bbe
update redame
C Reid
2019-01-21 19:34:30 -08:00
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2effb8589b
Convert snakemake cli into kubernetes-ready workflow (#1)
Chaz Reid
2019-01-21 19:28:31 -08:00
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0f18529a53
update travis to use minikube
C Reid
2019-01-21 19:26:58 -08:00
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b28c3a75be
update readme with vm-driver setting
C Reid
2019-01-21 19:21:17 -08:00
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4fb79596b4
update instructions
C Reid
2019-01-21 19:16:38 -08:00
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db7cdcee99
update gitignore
C Reid
2019-01-21 19:11:47 -08:00
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ff69a4beb2
add python-kubernetes to requirements file
C Reid
2019-01-21 18:47:00 -08:00
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34f0077b96
update readme quickstart description
C Reid
2019-01-21 18:46:19 -08:00
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b7d9392219
update readme with byok8s command line flag updates
C Reid
2019-01-21 15:09:24 -08:00
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69df5c07bb
update cli command to use snakemake + kubernetes
C Reid
2019-01-21 15:00:45 -08:00
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945fa14a97
add notes to readme
C Reid
2019-01-21 12:19:19 -08:00
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c4fe27e883
upgrade pyyaml
C Reid
2019-01-20 21:33:04 -08:00
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7da5a5e4ba
Update README.md
Chaz Reid
2019-01-17 14:20:33 -08:00
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05816b006d
typo sniper snipes a typo
C Reid
2019-01-17 13:57:32 -08:00
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31e2d0c3e1
banana -> bananas
C Reid
2019-01-17 13:53:38 -08:00
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d013ff2ddd
Add command line interface, python package, and tests (#1)
Chaz Reid
2019-01-17 13:51:40 -08:00
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b6fceb93e4
some simple workflow ideas
C. Titus Brown
2018-03-16 20:47:17 -07:00