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adding taxonomic classificaiton prep script

fix-instructions
Charles Reid 7 years ago
parent
3ddcc2f3c2
commit
d5e8e954ee
1 changed files with 26 additions and 0 deletions
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  1. 26
      scripts/taxclass_prep.sh

26
scripts/taxclass_prep.sh
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#!/bin/bash
mkdir -p /tmp/data
cd /tmp/data
curl -O https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-refseq-sbt-k51-2017.05.09.tar.gz
curl -O https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-refseq-sbt-k31-2017.05.09.tar.gz
curl -O https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-refseq-sbt-k21-2017.05.09.tar.gz
curl -O https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-genbank-sbt-k51-2017.05.09.tar.gz
curl -O https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-genbank-sbt-k31-2017.05.09.tar.gz
curl -O https://s3-us-west-1.amazonaws.com/spacegraphcats.ucdavis.edu/microbe-genbank-sbt-k21-2017.05.09.tar.gz
tar xzf microbe-refseq-sbt-k51-2017.05.09.tar.gz
tar xzf microbe-refseq-sbt-k31-2017.05.09.tar.gz
tar xzf microbe-refseq-sbt-k21-2017.05.09.tar.gz
tar xzf microbe-genbank-sbt-k51-2017.05.09.tar.gz
tar xzf microbe-genbank-sbt-k31-2017.05.09.tar.gz
tar xzf microbe-genbank-sbt-k21-2017.05.09.tar.gz
rm -r microbe-refseq-sbt-k51-2017.05.09.tar.gz
rm -r microbe-refseq-sbt-k31-2017.05.09.tar.gz
rm -r microbe-refseq-sbt-k21-2017.05.09.tar.gz
rm -r microbe-genbank-sbt-k51-2017.05.09.tar.gz
./get_trimmed_data.sh
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