2019-snakemake-byok8s

charlesreid1/2019-snakemake-byok8s

Author	SHA1	Message	Date
Charles Reid	b810e5e362	Merge branch 'better-tests' of https://github.com/charlesreid1/2019-snakemake-byok8s into better-tests * 'better-tests' of https://github.com/charlesreid1/2019-snakemake-byok8s:	2019-01-28 16:22:03 -08:00
C Reid	01a7647aae	more readme typo fixes	2019-01-26 01:39:15 -08:00
C Reid	6515a67225	add instructions for kubernetes using minikube alone, since it is a little bit complicated on aws nodes.	2019-01-26 01:33:06 -08:00
C Reid	2d54c50e32	Merge branch 'better-tests' * better-tests: (22 commits) update readme instructions add a slightly harder test switch to python build env. no material change yet. commit to lilic/travis-minikube kube-1.12 branch switch to an easier task. if this build fails it is the version numbers causing problems. implement coredns fixes, kubectl apply, and byok8s into travis tests fix flag fix flags and remote provider approach: force s3 updating tests with yml files to fix k8s dns container add kube-system DNS fix moving snakefile fix how snakefile is being dealt with. update requirements for kubernetes, snakemake, s3 bump k8s version, 1.9->1.10 update byok8s test - test all workflows update snakefile zeta workflow add byok8s tests - WIP make travis use python call byok8s from .travis.yml fix workflow labels in readme ...	2019-01-26 01:30:24 -08:00
C Reid	abd0fc8a6a	update readme instructions	2019-01-26 01:28:36 -08:00
Chaz Reid	beecef4b41	Better tests (#3 ) * update travis.yml to reset to master LiliC/travis-minikube * start k8s from test/ * fix workflow labels in readme * call byok8s from .travis.yml * make travis use python * add byok8s tests - WIP * update snakefile zeta workflow * update byok8s test - test all workflows * bump k8s version, 1.9->1.10 * update requirements for kubernetes, snakemake, s3 * fix how snakefile is being dealt with. * moving snakefile * add kube-system DNS fix * updating tests with yml files to fix k8s dns container * fix flags and remote provider approach: force s3 * fix flag * implement coredns fixes, kubectl apply, and byok8s into travis tests * switch to an easier task. if this build fails it is the version numbers causing problems. * commit to lilic/travis-minikube kube-1.12 branch * switch to python build env. no material change yet. * add a slightly harder test	2019-01-26 01:03:02 -08:00
Chaz Reid	23769105d0	Merge branch 'master' into better-tests	2019-01-26 01:02:52 -08:00
C Reid	104d0fe868	add a slightly harder test	2019-01-26 00:57:11 -08:00
C Reid	9bbc217d32	switch to python build env. no material change yet.	2019-01-26 00:51:51 -08:00
C Reid	86751c36a0	commit to lilic/travis-minikube kube-1.12 branch	2019-01-26 00:47:16 -08:00
C Reid	cd86326b8b	switch to an easier task. if this build fails it is the version numbers causing problems.	2019-01-26 00:25:17 -08:00
C Reid	7793f9cc32	implement coredns fixes, kubectl apply, and byok8s into travis tests	2019-01-26 00:19:58 -08:00
Charles Reid	6bb04d44d7	fix flag	2019-01-26 00:11:33 -08:00
Charles Reid	5b3c10d2dd	fix flags and remote provider approach: force s3	2019-01-26 00:04:23 -08:00
Charles Reid	47849200d0	updating tests with yml files to fix k8s dns container	2019-01-25 23:03:56 -08:00
Charles Reid	c2de3e8567	add kube-system DNS fix	2019-01-25 17:17:14 -08:00
Charles Reid	3b86a9ebe2	moving snakefile	2019-01-25 17:11:00 -08:00
Charles Reid	f669ff6951	fix how snakefile is being dealt with.	2019-01-25 17:07:45 -08:00
Charles Reid	3c93c1b236	update requirements for kubernetes, snakemake, s3	2019-01-25 13:44:53 -08:00
Charles Reid	1095efc568	bump k8s version, 1.9->1.10	2019-01-25 13:44:11 -08:00
Charles Reid	46108c379e	update byok8s test - test all workflows	2019-01-22 15:17:01 -08:00
Charles Reid	e47cfe66c0	update snakefile zeta workflow	2019-01-22 15:14:11 -08:00
C Reid	d3f295d7da	add byok8s tests - WIP	2019-01-22 15:00:08 -08:00
Chaz Reid	e99286a4e0	update travis.yml to reset to master LiliC/travis-minikube (#2 ) * update travis.yml to reset to master LiliC/travis-minikube * start k8s from test/ * fix workflow labels in readme * call byok8s from .travis.yml * make travis use python	2019-01-22 00:35:37 -08:00
C Reid	d18d7416a3	make travis use python	2019-01-22 00:32:15 -08:00
C Reid	04dce75b10	call byok8s from .travis.yml	2019-01-22 00:28:46 -08:00
C Reid	675023537c	fix workflow labels in readme	2019-01-22 00:28:20 -08:00
C Reid	7f537c1f8e	start k8s from test/	2019-01-22 00:22:18 -08:00
Chaz Reid	c2b7d2c1f6	Merge branch 'master' into reset-travis	2019-01-21 21:50:47 -08:00
C Reid	43e9832f99	update travis.yml to reset to master LiliC/travis-minikube	2019-01-21 21:46:25 -08:00
C Reid	8eb101ee41	try bumping versions	2019-01-21 21:32:56 -08:00
C Reid	e1c3c36057	try localkube bootstrap and kubernetes version	2019-01-21 21:26:53 -08:00
C Reid	fe6d0a1b7f	try localkube bootstrap	2019-01-21 21:02:50 -08:00
C Reid	cca8aecb0e	remove hard-coded kuberentes version	2019-01-21 20:55:38 -08:00
C Reid	76069a7c36	one line per command	2019-01-21 20:50:53 -08:00
C Reid	67278756c4	add language to .travis.yml	2019-01-21 20:47:07 -08:00
C Reid	f011a2bcc8	Merge branch 'fix-travis' * fix-travis: fix travis	2019-01-21 20:39:17 -08:00
C Reid	c7996525c4	fix travis	2019-01-21 20:39:08 -08:00
C Reid	636b2a26d3	fix travis link	2019-01-21 20:28:12 -08:00
C Reid	50c3e3a5f6	update order	2019-01-21 20:23:39 -08:00
C Reid	63e21d5139	add coreutils to build deps	2019-01-21 19:52:02 -08:00
C Reid	6563612524	Merge branch 'k8' * k8: update hello/goodbye/amy/beth to alpha/gamma/red/blue update redame update travis to use minikube update readme with vm-driver setting update instructions update gitignore add python-kubernetes to requirements file update readme quickstart description update readme with byok8s command line flag updates update cli command to use snakemake + kubernetes add notes to readme	2019-01-21 19:42:14 -08:00
C Reid	0b2eff8bd5	update hello/goodbye/amy/beth to alpha/gamma/red/blue	2019-01-21 19:39:59 -08:00
C Reid	191dc78bbe	update redame	2019-01-21 19:34:30 -08:00
Chaz Reid	2effb8589b	Convert snakemake cli into kubernetes-ready workflow (#1 ) * add notes to readme * update cli command to use snakemake + kubernetes * update readme with byok8s command line flag updates * update readme quickstart description * add python-kubernetes to requirements file * update gitignore * update instructions * update readme with vm-driver setting * update travis to use minikube	2019-01-21 19:28:31 -08:00
C Reid	0f18529a53	update travis to use minikube	2019-01-21 19:26:58 -08:00
C Reid	b28c3a75be	update readme with vm-driver setting	2019-01-21 19:21:17 -08:00
C Reid	4fb79596b4	update instructions	2019-01-21 19:16:38 -08:00
C Reid	db7cdcee99	update gitignore	2019-01-21 19:11:47 -08:00
C Reid	ff69a4beb2	add python-kubernetes to requirements file	2019-01-21 18:47:00 -08:00

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60 Commits