Charles Reid
af6c9bd7bd
add get docker script to dotfiles
6 years ago
Charles Reid
203b2c4624
Adding trim information to output of kaiju2krona step
6 years ago
Charles Reid
b77ef2d1d3
tell git to stop asking about matching/simple
6 years ago
Charles Reid
be21e69ac2
nocompatible not working??
6 years ago
Charles Reid
e62844a9ec
use vim for goodness sake, why is git ignoring $EDITOR and $GIT_EDITOR both???
6 years ago
Charles Reid
6ce2cd4607
yikes, turn off spellcheck
6 years ago
Charles Reid
526f6377a8
add GIT_EDITOR because git does not care about EDITOR apparently
6 years ago
Charles Reid
7e86039567
.extras, not .extra
6 years ago
Charles Reid
35f5ef9fa0
get down to business in vimrc
6 years ago
Charles Reid
7c1a8fe970
undoing previous commit
6 years ago
Charles Reid
0bf5aa6478
improve logic of output filenames
6 years ago
Charles Reid
bd9480d01e
remove line breaks
6 years ago
Charles Reid
584ad42f0b
make subprocess.call() command more clear
6 years ago
Charles Reid
c76c112e51
update script description
6 years ago
Charles Reid
24e35a6e8f
Merge branch 'master' of git.charlesreid1.com:dotfiles/dahak-yeti
...
* 'master' of git.charlesreid1.com:dotfiles/dahak-yeti:
spit run commands
fix more formatting/indentation
fix formatting/indentation
Split up single-line commands for reaadability
6 years ago
Charles Reid
728f0cfb55
Bump kaiju version number
6 years ago
Charles Reid
b798296386
spit run commands
6 years ago
Charles Reid
c6d06d03a1
fix more formatting/indentation
6 years ago
Charles Reid
7c2b56758a
fix formatting/indentation
6 years ago
Charles Reid
c69941ab59
Split up single-line commands for reaadability
6 years ago
Charles Reid
0dd4b27149
update on .extra file
6 years ago
Charles Reid
95b4c9adbe
add note on .extras file
6 years ago
Charles Reid
31d392d1e0
Update README.md
6 years ago
Charles Reid
a9f5c05be9
Switch on over to the BSD 3 license.
...
Compatible with previous MIT license.
6 years ago
Charles Reid
efa43cfe54
Update list of scripts in readme
6 years ago
Charles Reid
52b4db69c4
improve line breaks
6 years ago
Charles Reid
eec75f913a
Add python version of compare components
6 years ago
Charles Reid
d7ef697407
Adding shell version of visualize script
6 years ago
Charles Reid
4faa1726ef
adding shell version of kaiju2krona
6 years ago
Charles Reid
ac96648155
adding -z 4 flag
6 years ago
Charles Reid
e252ab085d
bumping kaiju version
6 years ago
Charles Reid
8dea9dd8dc
Fix command line args
6 years ago
Charles Reid
bdbe4fe7ff
Fix typo
6 years ago
Charles Reid
ced2f394c9
fixing dir name and adding unpack (shell version)
6 years ago
Charles Reid
4e3a465517
function-ify get trimmed data.py
6 years ago
Charles Reid
c0ecd343b3
Merge branch 'master' of https://github.com/charlesreid1/dahak-yeti
...
* 'master' of https://github.com/charlesreid1/dahak-yeti :
Update unpack_kaiju.py
6 years ago
Charles Reid
f19056b910
Bump kaiju version, fix indentation
6 years ago
Charles Reid
7dd9265f5e
Added 1 percent classified docker run command
6 years ago
Charles Reid
0abb78d247
calculate signatures script now imports get_prefix
6 years ago
Charles Reid
6098ad2222
Update unpack_kaiju.py
6 years ago
Charles Reid
ef3b447fec
Updating python scripts from yeti
6 years ago
Charles Reid
73811b8f7f
Removing old visualize krona script (misspelled)
6 years ago
Charles Reid
afeff8580a
Updating run all part 2 script - everybody is python.
6 years ago
Charles Reid
4f8f52d727
update run all part 2 to use python scripts
6 years ago
Charles Reid
308fc01664
Separate get_prefix function into separate file (single location)
6 years ago
Charles Reid
202f5215f0
Adding python version of krona viz script
6 years ago
Charles Reid
7a9900750e
fix flags for filter taxa
6 years ago
Charles Reid
d9011fd5f2
add python version of filter taxa script
6 years ago
Charles Reid
1be2f9ead2
Removing old, mis-named version of script
6 years ago
Charles Reid
39dc47a220
Fix kaiju report command
6 years ago
