af6c9bd7bd
add get docker script to dotfiles
2018-03-08 02:53:02 -08:00
203b2c4624
Adding trim information to output of kaiju2krona step
2018-03-08 03:07:04 +00:00
b77ef2d1d3
tell git to stop asking about matching/simple
2018-03-08 01:01:40 +00:00
be21e69ac2
nocompatible not working??
2018-03-08 01:01:01 +00:00
e62844a9ec
use vim for goodness sake, why is git ignoring $EDITOR and $GIT_EDITOR both???
2018-03-08 00:59:44 +00:00
6ce2cd4607
yikes, turn off spellcheck
2018-03-07 14:35:55 -08:00
526f6377a8
add GIT_EDITOR because git does not care about EDITOR apparently
2018-03-07 14:32:23 -08:00
7e86039567
.extras, not .extra
2018-03-06 03:06:21 -08:00
35f5ef9fa0
get down to business in vimrc
2018-03-06 03:05:16 -08:00
7c1a8fe970
undoing previous commit
2018-03-02 11:21:11 -08:00
0bf5aa6478
improve logic of output filenames
2018-03-02 11:20:14 -08:00
bd9480d01e
remove line breaks
2018-03-02 11:17:49 -08:00
584ad42f0b
make subprocess.call() command more clear
2018-03-02 11:17:00 -08:00
c76c112e51
update script description
2018-03-02 11:16:24 -08:00
24e35a6e8f
Merge branch 'master' of git.charlesreid1.com:dotfiles/dahak-yeti
...
* 'master' of git.charlesreid1.com:dotfiles/dahak-yeti:
spit run commands
fix more formatting/indentation
fix formatting/indentation
Split up single-line commands for reaadability
2018-02-27 11:11:54 -08:00
728f0cfb55
Bump kaiju version number
2018-02-27 11:11:22 -08:00
b798296386
spit run commands
2018-02-22 13:07:11 -08:00
c6d06d03a1
fix more formatting/indentation
2018-02-22 13:06:56 -08:00
7c2b56758a
fix formatting/indentation
2018-02-22 13:06:20 -08:00
c69941ab59
Split up single-line commands for reaadability
2018-02-22 13:05:39 -08:00
0dd4b27149
update on .extra file
2018-02-21 17:52:59 -08:00
95b4c9adbe
add note on .extras file
2018-02-21 17:51:28 -08:00
31d392d1e0
Update README.md
2018-02-21 17:41:30 -08:00
a9f5c05be9
Switch on over to the BSD 3 license.
...
Compatible with previous MIT license.
2018-02-21 17:38:09 -08:00
efa43cfe54
Update list of scripts in readme
2018-02-20 19:39:38 -08:00
52b4db69c4
improve line breaks
2018-02-20 19:39:18 -08:00
eec75f913a
Add python version of compare components
2018-02-20 19:27:47 -08:00
d7ef697407
Adding shell version of visualize script
2018-02-20 19:21:44 -08:00
4faa1726ef
adding shell version of kaiju2krona
2018-02-20 19:20:58 -08:00
ac96648155
adding -z 4 flag
2018-02-20 18:59:24 -08:00
e252ab085d
bumping kaiju version
2018-02-20 18:59:14 -08:00
8dea9dd8dc
Fix command line args
2018-02-20 18:55:13 -08:00
bdbe4fe7ff
Fix typo
2018-02-20 18:54:57 -08:00
ced2f394c9
fixing dir name and adding unpack (shell version)
2018-02-20 18:54:37 -08:00
4e3a465517
function-ify get trimmed data.py
2018-02-20 17:16:36 -08:00
c0ecd343b3
Merge branch 'master' of https://github.com/charlesreid1/dahak-yeti
...
* 'master' of https://github.com/charlesreid1/dahak-yeti :
Update unpack_kaiju.py
2018-02-20 17:09:10 -08:00
f19056b910
Bump kaiju version, fix indentation
2018-02-20 17:00:51 -08:00
7dd9265f5e
Added 1 percent classified docker run command
2018-02-20 17:00:24 -08:00
0abb78d247
calculate signatures script now imports get_prefix
2018-02-20 16:48:21 -08:00
6098ad2222
Update unpack_kaiju.py
2018-02-20 15:12:44 -08:00
ef3b447fec
Updating python scripts from yeti
2018-02-20 14:43:01 -08:00
73811b8f7f
Removing old visualize krona script (misspelled)
2018-02-20 14:26:44 -08:00
afeff8580a
Updating run all part 2 script - everybody is python.
2018-02-20 14:25:42 -08:00
4f8f52d727
update run all part 2 to use python scripts
2018-02-20 14:24:06 -08:00
308fc01664
Separate get_prefix function into separate file (single location)
2018-02-20 14:23:46 -08:00
202f5215f0
Adding python version of krona viz script
2018-02-20 14:23:12 -08:00
7a9900750e
fix flags for filter taxa
2018-02-20 13:58:37 -08:00
d9011fd5f2
add python version of filter taxa script
2018-02-20 13:54:30 -08:00
1be2f9ead2
Removing old, mis-named version of script
2018-02-20 13:43:44 -08:00
39dc47a220
Fix kaiju report command
2018-02-20 13:43:27 -08:00
