 Charles Reid
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cd4cf37a5d
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Renaming kaiju2krona
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6 years ago |
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Charles Reid
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a2d2b4a1eb
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minor fixes to improve scripts
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6 years ago |
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Charles Reid
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07174251f0
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Add python version of kaiju2korona
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6 years ago |
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Charles Reid
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ca90dc2d7d
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Fix directory name
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6 years ago |
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Charles Reid
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9717ffbfcd
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updating kaiju version number to 1.6.1
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6 years ago |
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Charles Reid
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f549dc5f85
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Small fixes to run kaiju
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6 years ago |
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Charles Reid
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df2b026711
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add run kaiju script
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6 years ago |
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Charles Reid
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e24e9790f7
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function-ify calculate signatures
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6 years ago |
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Charles Reid
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86a9d378d3
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add (not quite working) python version of calculate signatures
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6 years ago |
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Charles Reid
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6619907b6b
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upgrade shebang to python3
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6 years ago |
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Charles Reid
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67a5590266
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upgrade shebang to python3
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6 years ago |
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Charles Reid
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a96334d3ab
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Removing old Bash versions of scripts replaced by new Python versions
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6 years ago |
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Charles Reid
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bfd8df8597
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fix typo
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6 years ago |
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Charles Reid
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ebee4cee9c
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update singularity script to add apt key
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6 years ago |
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Charles Reid
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3f8cff517b
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Converting run part 1 install scripts from bash to python.
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6 years ago |
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Charles Reid
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867260ca03
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Make install pyenv script into python script
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6 years ago |
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Charles Reid
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721cae66e6
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Add Python versions of shell scripts
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6 years ago |
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Charles Reid
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6265a85600
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Assume bash is already the default shell. Prevents need to set password manually.
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6 years ago |
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Charles Reid
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83fd29e4d4
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try to fix run kaiju
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6 years ago |
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Charles Reid
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8b314cc8ff
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fix end of line typo
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6 years ago |
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Charles Reid
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5bf5345630
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Update sourmash version
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6 years ago |
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Charles Reid
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a31e974465
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Update version of sourmash
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6 years ago |
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Charles Reid
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41e36146be
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unpack kaiju should be executable
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6 years ago |
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Charles Reid
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9c20165911
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Split kaiju scripts into unpack and run
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6 years ago |
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Charles Reid
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b1c641afc0
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add updates from yeti
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6 years ago |
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Charles Reid
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b6806bb207
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Add remaining steps in scripts.
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6 years ago |
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Charles Reid
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9a329e6c98
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updating part 1 order
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6 years ago |
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Charles Reid
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088003afc4
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split run all into part 1 and part 2
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6 years ago |
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Charles Reid
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8bd5d1e37f
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Adding a run all script
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6 years ago |
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Charles Reid
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bb7fdaa1a1
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make executable
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6 years ago |
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Charles Reid
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5505ddaf40
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Make executable and add instructions
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6 years ago |
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Charles Reid
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67110d8dfb
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Merge branch 'master' of https://github.com/charlesreid1/dahak-yeti
* 'master' of https://github.com/charlesreid1/dahak-yeti:
Add order to scripts..
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6 years ago |
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Charles Reid
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b2babbb149
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updating instructions to mention passwd
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6 years ago |
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Charles Reid
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ce4398706b
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Add order to scripts..
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6 years ago |
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Charles Reid
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9e0e659d5c
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removing shell script
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6 years ago |
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Charles Reid
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c5f448924c
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add scripts to calculate signatures, get trim data, get biocontainers
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6 years ago |
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Charles Reid
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f9f3ceb7c3
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fix syntax error
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6 years ago |
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Charles Reid
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65e5023c61
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scriptify taxonomic classification preparation script
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6 years ago |
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Charles Reid
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1bc3af7206
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Adding scripts to get and containerize trimmed data
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6 years ago |
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Charles Reid
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9cfe32f746
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Adding a scripts readme
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6 years ago |
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Charles Reid
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d5e8e954ee
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adding taxonomic classificaiton prep script
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6 years ago |
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Charles Reid
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3ddcc2f3c2
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Adding trimmed data URLs and script to download trimmed data
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6 years ago |
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Charles Reid
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c1ca4fea8f
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shrink image
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6 years ago |
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Charles Reid
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9fb128ef0e
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add screenshot image
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6 years ago |
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Charles Reid
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17b0657717
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add screen
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6 years ago |
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Charles Reid
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2b76ba7a5d
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update urls
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6 years ago |
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Charles Reid
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6cdfc31787
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adding explanation to readme
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6 years ago |
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Charles Reid
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7a72816094
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add yes flag to conda install
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6 years ago |
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Charles Reid
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7d51c7a00a
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updating scripts
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6 years ago |
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Charles Reid
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866679578c
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adding install pyenv/conda scripts
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6 years ago |
