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• 39dc47a220 Fix kaiju report command Charles Reid 2018-02-20 13:43:27 -08:00
• cd4cf37a5d Renaming kaiju2krona Charles Reid 2018-02-20 13:10:37 -08:00
• a2d2b4a1eb minor fixes to improve scripts Charles Reid 2018-02-20 11:56:47 -08:00
• 07174251f0 Add python version of kaiju2korona Charles Reid 2018-02-20 11:48:55 -08:00
• ca90dc2d7d Fix directory name Charles Reid 2018-02-19 16:33:58 -08:00
• 9717ffbfcd updating kaiju version number to 1.6.1 Charles Reid 2018-02-19 16:31:12 -08:00
• f549dc5f85 Small fixes to run kaiju Charles Reid 2018-02-19 16:27:58 -08:00
• df2b026711 add run kaiju script Charles Reid 2018-02-19 16:24:36 -08:00
• e24e9790f7 function-ify calculate signatures Charles Reid 2018-02-19 16:24:22 -08:00
• 86a9d378d3 add (not quite working) python version of calculate signatures Charles Reid 2018-02-19 12:43:45 -08:00
• 6619907b6b upgrade shebang to python3 Charles Reid 2018-02-19 12:00:18 -08:00
• 67a5590266 upgrade shebang to python3 Charles Reid 2018-02-19 11:59:46 -08:00
• a96334d3ab Removing old Bash versions of scripts replaced by new Python versions Charles Reid 2018-02-19 11:57:13 -08:00
• bfd8df8597 fix typo Charles Reid 2018-02-19 06:18:18 -08:00
• ebee4cee9c update singularity script to add apt key Charles Reid 2018-02-19 06:17:23 -08:00
• 3f8cff517b Converting run part 1 install scripts from bash to python. Charles Reid 2018-02-19 06:07:11 -08:00
• 867260ca03 Make install pyenv script into python script Charles Reid 2018-02-19 04:43:01 -08:00
• 721cae66e6 Add Python versions of shell scripts Charles Reid 2018-02-16 15:28:41 -08:00
• 6265a85600 Assume bash is already the default shell. Prevents need to set password manually. Charles Reid 2018-02-16 15:27:54 -08:00
• 83fd29e4d4 try to fix run kaiju Charles Reid 2018-02-16 13:23:48 -08:00
• 8b314cc8ff fix end of line typo Charles Reid 2018-02-15 14:14:55 -08:00
• 5bf5345630 Update sourmash version Chaz Reid 2018-02-15 13:51:20 -08:00
• a31e974465 Update version of sourmash Chaz Reid 2018-02-15 13:50:45 -08:00
• 41e36146be unpack kaiju should be executable Charles Reid 2018-02-15 10:38:17 -08:00
• 9c20165911 Split kaiju scripts into unpack and run Charles Reid 2018-02-15 10:34:56 -08:00
• b1c641afc0 add updates from yeti Charles Reid 2018-02-14 22:45:41 -08:00
• b6806bb207 Add remaining steps in scripts. Charles Reid 2018-02-14 22:18:02 -08:00
• 9a329e6c98 updating part 1 order Charles Reid 2018-02-14 00:40:23 -08:00
• 088003afc4 split run all into part 1 and part 2 Charles Reid 2018-02-14 00:39:53 -08:00
• 8bd5d1e37f Adding a run all script Charles Reid 2018-02-14 00:36:16 -08:00
• bb7fdaa1a1 make executable Charles Reid 2018-02-14 00:04:59 -08:00
• 5505ddaf40 Make executable and add instructions Charles Reid 2018-02-13 23:53:30 -08:00
• 67110d8dfb Merge branch 'master' of https://github.com/charlesreid1/dahak-yeti Charles Reid 2018-02-13 23:38:47 -08:00
• b2babbb149 updating instructions to mention passwd Charles Reid 2018-02-13 23:38:06 -08:00
• ce4398706b Add order to scripts.. Charles Reid 2018-02-14 07:32:42 +00:00
• 9e0e659d5c removing shell script Charles Reid 2018-02-13 22:34:12 -08:00
• c5f448924c add scripts to calculate signatures, get trim data, get biocontainers Charles Reid 2018-02-13 22:33:11 -08:00
• f9f3ceb7c3 fix syntax error Charles Reid 2018-02-13 20:08:45 -08:00
• 65e5023c61 scriptify taxonomic classification preparation script Charles Reid 2018-02-13 20:06:29 -08:00
• 1bc3af7206 Adding scripts to get and containerize trimmed data Charles Reid 2018-02-13 20:06:07 -08:00
• 9cfe32f746 Adding a scripts readme Charles Reid 2018-02-13 19:54:42 -08:00
• d5e8e954ee adding taxonomic classificaiton prep script Charles Reid 2018-02-13 19:51:50 -08:00
• 3ddcc2f3c2 Adding trimmed data URLs and script to download trimmed data Charles Reid 2018-02-13 19:49:15 -08:00
• c1ca4fea8f shrink image Charles Reid 2018-02-13 15:47:22 -08:00
• 9fb128ef0e add screenshot image Charles Reid 2018-02-13 15:45:51 -08:00
• 17b0657717 add screen Charles Reid 2018-02-13 15:45:29 -08:00
• 2b76ba7a5d update urls Charles Reid 2018-02-13 15:31:10 -08:00
• 6cdfc31787 adding explanation to readme Charles Reid 2018-02-13 15:12:54 -08:00
• 7a72816094 add yes flag to conda install Charles Reid 2018-02-13 15:06:55 -08:00
• 7d51c7a00a updating scripts Charles Reid 2018-02-13 15:04:34 -08:00
• 866679578c adding install pyenv/conda scripts Charles Reid 2018-02-13 15:03:19 -08:00
• 0a6f826f61 Add pyenv to path, in case. make scripts executable. Charles Reid 2018-02-13 14:26:21 -08:00
• e543d395c2 Add workflow prep scripts using pyenv Charles Reid 2018-02-13 14:24:34 -08:00
• fa10ad5557 add installation instructions to readme Charles Reid 2018-02-13 13:40:00 -08:00
• aecd117806 yeti is purple Charles Reid 2018-02-13 13:36:39 -08:00
• 29a37c6f4d include some imortant things accidentally left out Charles Reid 2018-02-13 13:35:04 -08:00
• a7b0a12971 update before installing Charles Reid 2018-02-13 13:34:47 -08:00
• ad8aca9464 adding instructions to pre-bootstrap Charles Reid 2018-02-13 12:14:55 -08:00
• 432a8fafe3 make vim directories in pre-bootstrap script Charles Reid 2018-02-13 12:12:17 -08:00
• 3d7a4178f9 scale back package installation script Charles Reid 2018-02-13 12:11:31 -08:00
• e7c1080750 Init commit of dotfiles Charles Reid 2018-02-13 12:08:31 -08:00
• 6613241baf update readme Charles Reid 2018-02-13 12:04:17 -08:00
• 907bda4fc3 add MIT license Charles Reid 2018-02-13 12:03:35 -08:00