04b44a3e80 
					 
					
						
						
							
							Merge pull request  #13  from fp9695253/master  
						
						 
						
						... 
						
						
						
						Add virtual environment installation step, make users passwordless sudoer 
						
						
					 
					
						2018-12-09 10:30:18 -08:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						812ee7c43f 
					 
					
						
						
							
							Update make_user.sh  
						
						 
						
						
						
						
					 
					
						2018-12-09 10:29:41 -08:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						0c4afe6d54 
					 
					
						
						
							
							Merge branch 'master' of github.com:dahak-metagenomics/dahak-yeti  
						
						 
						
						... 
						
						
						
						* 'master' of github.com:dahak-metagenomics/dahak-yeti:
  update gitconfig on yeti
  fix the make_user.sh script
  update make user script 
						
						
					 
					
						2018-11-05 07:22:23 -08:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						be8f762578 
					 
					
						
						
							
							fix REGUSER  
						
						 
						
						
						
						
					 
					
						2018-11-05 07:21:46 -08:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						d3394e82bf 
					 
					
						
						
							
							update gitconfig on yeti  
						
						 
						
						
						
						
					 
					
						2018-10-28 13:52:12 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Yamma Snake 
							
						 
					 
					
						
						
							
						
						50af5feadc 
					 
					
						
						
							
							add commented out line, mainly to test committing as yammasnake  
						
						 
						
						
						
						
					 
					
						2018-10-25 13:56:42 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Florence Python 
							
						 
					 
					
						
						
							
						
						57b5d5c06c 
					 
					
						
						
							
							Merge branch 'master' of github.com:fp9695253/dahak-yeti  
						
						 
						
						... 
						
						
						
						* 'master' of github.com:fp9695253/dahak-yeti:
  update sudo init to install docker compose 
						
						
					 
					
						2018-10-25 13:55:17 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Florence Python 
							
						 
					 
					
						
						
							
						
						a57ca399db 
					 
					
						
						
							
							Merge branch 'master' of github.com:dahak-metagenomics/dahak-yeti  
						
						 
						
						... 
						
						
						
						* 'master' of github.com:dahak-metagenomics/dahak-yeti:
  fix the make_user.sh script
  update make user script 
						
						
					 
					
						2018-10-25 13:55:00 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						36281557a9 
					 
					
						
						
							
							Merge branch 'master' of github.com:dahak-metagenomics/dahak-yeti  
						
						 
						
						... 
						
						
						
						* 'master' of github.com:dahak-metagenomics/dahak-yeti:
  fix the make_user.sh script
  update make user script
  move the install_netdata step to tasks_sudo
  add script to cretae a user susing useradd and usermod
  include beavo and yeti in bash prompt 
						
						
					 
					
						2018-10-25 13:54:20 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						e47254a4ba 
					 
					
						
						
							
							update sudo init to install docker compose  
						
						 
						
						
						
						
					 
					
						2018-10-25 13:49:46 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						167612bbab 
					 
					
						
						
							
							Merge branch 'master' of github.com:fp9695253/dahak-yeti  
						
						 
						
						... 
						
						
						
						* 'master' of github.com:fp9695253/dahak-yeti:
  make new user passwordless sudoer
  add the virtualenv install script
  add virtualenv init step 
						
						
					 
					
						2018-10-25 13:47:23 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						fddb15d05d 
					 
					
						
						
							
							fix the make_user.sh script  
						
						 
						
						
						
						
					 
					
						2018-10-25 12:28:04 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						08bd38f984 
					 
					
						
						
							
							update make user script  
						
						 
						
						
						
						
					 
					
						2018-10-25 12:18:51 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Florence Python 
							
						 
					 
					
						
						
							
						
						e068ac01f1 
					 
					
						
						
							
							make new user passwordless sudoer  
						
						 
						
						
						
						
					 
					
						2018-10-24 22:05:05 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Florence Python 
							
						 
					 
					
						
						
							
						
						af7f610c48 
					 
					
						
						
							
							add the virtualenv install script  
						
						 
						
						
						
						
					 
					
						2018-10-24 22:04:40 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
							
							
								 
								Florence Python 
							
						 
					 
					
						
						
							
						
						0dcdab5c68 
					 
					
						
						
							
							add virtualenv init step  
						
						 
						
						
						
						
					 
					
						2018-10-24 22:04:26 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						335bf4983e 
					 
					
						
						
							
							move the install_netdata step to tasks_sudo  
						
						 
						
						
						
						
					 
					
						2018-10-24 12:18:27 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						351be0e4ae 
					 
					
						
						
							
							add script to cretae a user susing useradd and usermod  
						
						 
						
						
						
						
					 
					
						2018-10-24 12:17:56 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						8ab26702f1 
					 
					
						
						
							
							Merge pull request  #9  from dahak-metagenomics/bashprompt  
						
						 
						
						... 
						
						
						
						bash prompt: yeti + beavo 
						
						
					 
					
						2018-10-21 01:12:36 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						2c0b9d381a 
					 
					
						
						
							
							include beavo and yeti in bash prompt  
						
						 
						
						
						
						
					 
					
						2018-10-21 01:11:56 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						9426fe2268 
					 
					
						
						
							
							Merge remote-tracking branch 'gh/master'  
						
						 
						
						... 
						
						
						
						* gh/master: 
						
						
					 
					
						2018-08-10 12:54:41 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						ff441605d4 
					 
					
						
						
							
							Merge pull request  #7  from dahak-metagenomics/gitconfig  
						
						 
						
						... 
						
						
						
						Gitconfig 
						
						
					 
					
						2018-07-26 21:45:29 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						cdc403637b 
					 
					
						
						
							
							Merge pull request  #11  from dahak-metagenomics/gitconfig  
						
						 
						
						... 
						
						
						
						add editor directive to gitconfig 
						
						
					 
					
						2018-07-26 10:52:53 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						d190c6d4f8 
					 
					
						
						
							
							add editor directive to gitconfig  
						
						 
						
						
						
						
					 
					
						2018-07-26 10:51:07 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						ad8d525983 
					 
					
						
						
							
							Merge pull request  #10  from charlesreid1/master  
						
						 
						
						... 
						
						
						
						aliases + DON'T PUSH TO MASTER 
						
						
					 
					
						2018-07-25 23:30:52 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						49bb2097e3 
					 
					
						
						
							
							Merge pull request  #6  from dahak-metagenomics/dont-push-to-master  
						
						 
						
						... 
						
						
						
						DONT PUSH TO MASTER 
						
						
					 
					
						2018-07-25 23:28:51 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						76a1eeb15a 
					 
					
						
						
							
							DONT PUSH TO MASTER  
						
						 
						
						
						
						
					 
					
						2018-07-25 23:26:21 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						37f4bdf4a4 
					 
					
						
						
							
							add handy gitconfig shortcuts  
						
						 
						
						
						
						
					 
					
						2018-07-24 13:01:40 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						5b09a2aa2f 
					 
					
						
						
							
							Merge branch 'master' of github.com:charlesreid1/dahak-yeti  
						
						 
						
						... 
						
						
						
						* 'master' of github.com:charlesreid1/dahak-yeti:
  No more todo items, completed
  change hard-coded home path to HOME var
  update instructions: users run tasks_user, not tasks_sudo 
						
						
					 
					
						2018-07-22 20:40:05 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						5bda32ef1f 
					 
					
						
						
							
							Merge branch 'master' of github.com:dahak-metagenomics/dahak-yeti  
						
						 
						
						... 
						
						
						
						* 'master' of github.com:dahak-metagenomics/dahak-yeti:
  nvm, python 3 is ony python3
  aptitude installs python 2 by default, needs to install python 3
  Update install_packages.sh
  Update install_packages.sh
  dahak-yeti -> yeti
  install system python before installing singularity
  log output from install singularity script 
						
						
					 
					
						2018-07-22 20:39:59 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						2236075b6f 
					 
					
						
						
							
							Merge pull request  #5  from dahak-metagenomics/fix-instructions  
						
						 
						
						... 
						
						
						
						Fix instructions 
						
						
					 
					
						2018-07-18 12:26:00 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						175aa51ecb 
					 
					
						
						
							
							No more todo items, completed  
						
						 
						
						
						
						
					 
					
						2018-07-18 12:23:20 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						a1d92788e0 
					 
					
						
						
							
							change hard-coded home path to HOME var  
						
						 
						
						
						
						
					 
					
						2018-07-18 12:09:12 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						8331b4caf5 
					 
					
						
						
							
							update instructions: users run tasks_user, not tasks_sudo  
						
						 
						
						
						
						
					 
					
						2018-07-18 12:03:59 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						e7fa3d8291 
					 
					
						
						
							
							clean bootstrapping process  
						
						 
						
						
						
						
					 
					
						2018-07-16 20:40:17 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						ee6a54e3e6 
					 
					
						
						
							
							nvm, python 3 is ony python3  
						
						 
						
						
						
						
					 
					
						2018-07-11 12:13:11 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						2f56c29549 
					 
					
						
						
							
							aptitude installs python 2 by default, needs to install python 3  
						
						 
						
						
						
						
					 
					
						2018-07-11 12:12:02 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						1014576682 
					 
					
						
						
							
							Update install_packages.sh  
						
						 
						
						
						
						
					 
					
						2018-07-09 09:27:34 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						0c06b158ad 
					 
					
						
						
							
							Update install_packages.sh  
						
						 
						
						
						
						
					 
					
						2018-07-08 21:50:03 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						c81e298f29 
					 
					
						
						
							
							Merge pull request  #4  from dahak-metagenomics/master  
						
						 
						
						... 
						
						
						
						transfer updates from dahak yeti to charlesreid1 fork 
						
						
					 
					
						2018-07-06 10:48:14 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						8e465703ad 
					 
					
						
						
							
							dahak-yeti -> yeti  
						
						 
						
						
						
						
					 
					
						2018-07-03 09:59:34 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						91b189bfed 
					 
					
						
						
							
							install system python before installing singularity  
						
						 
						
						
						
						
					 
					
						2018-07-03 09:56:10 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						cd92228135 
					 
					
						
						
							
							log output from install singularity script  
						
						 
						
						
						
						
					 
					
						2018-07-03 09:42:20 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						0341e0acfe 
					 
					
						
						
							
							add missing step to install singularity script  
						
						 
						
						
						
						
					 
					
						2018-07-01 10:12:16 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						d98616f85a 
					 
					
						
						
							
							update install singularity script - bump version and do it in /tmp  
						
						 
						
						
						
						
					 
					
						2018-07-01 10:10:19 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						528eac06c4 
					 
					
						
						
							
							make install_singularity.sh executable  
						
						 
						
						
						
						
					 
					
						2018-07-01 09:57:40 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						6f3273faed 
					 
					
						
						
							
							generate ssh keys, convert singularity installation to bash script, and update sudo init script to call the bash script  
						
						 
						
						
						
						
					 
					
						2018-06-29 13:02:34 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						6c95a3e3a6 
					 
					
						
						
							
							add psutil for snakemake benchmarking  
						
						 
						
						
						
						
					 
					
						2018-06-19 20:24:02 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						aa989d21e7 
					 
					
						
						
							
							fix some problems with the install singularity script  
						
						 
						
						
						
						
					 
					
						2018-06-19 15:35:07 -07:00  
					
					
						 
						
						
							
							
							
							
							
							 
						
					 
				 
			
				
					
						
					 
					
						
						
							
						
						4629af0d4c 
					 
					
						
						
							
							singularity install script should do things the easy way  
						
						 
						
						
						
						
					 
					
						2018-06-18 16:19:40 -07:00